Research

DMS Prof. Pieter Visscher honored with GSA Career Award

Please join us in congratulating Prof. Pieter Visscher for receiving the Geological Society of America’s 2025 Distinguished Career Award (sponsored by the Geobiology and Geomicrobiology Division). 

Pieter is honored for his decade-long involvement in an NSF-sponsored project that has worked with undergraduate students studying microbial sediments in Puerto Rico. Between 2000 and 2011, Pieter brought 68 of these students to Avery Point for a two-week geomicrobiology short course. None of these first-generation college students had visited the continental US before. His continued encouragement inspired over 60 students in this program to pursue graduate degrees in the US. He taught this course twice in France, once in Argentina, and once in Chile. 

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Prof. Pieter Visscher

Pieter is further commended for his pioneering Astrobiology work, pursuing the fundamental questions: Where are we coming from, where are we going, and what is our future? His tireless curiosity ultimately led to the establishment of NASA’s Astrobiology Institute (NAI) in 1998; the product of a four-decade-long collaboration with scholars, scientists, and engineers from around the country. 

We asked Pieter to name a key paper from the many published in his career - he chose his 2020 study of arsenotrophic microbial mats that allow inferring our past: 

Visscher P.T., K.L. Gallagher, A. Bouton, M.E. Farias, D. Kurth, B.P. Burns, M.R. Walter, M. Sancho-Tomas, P. Philippot, A. Somogyi, K. Medjoubi, E. Vennin, R. Bourillot, M. Contreras, C. Dupraz. 2020. Modern arsenotrophic microbial mats provide an analogue for life in the anoxic Archean.  Nature Communications Earth & Environment 1:24

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Antelope Island at the Great Salt Lake in Utah is one of 50+ sites in more than 20 countries where Visscher has studied fossil and modern analogues of Earth’s oldest known ecosystems.

Citation

 

by Tracy Frank: 

Pieter T. Visscher. Over a distinguished career spanning more than three decades, Dr. Visscher has led advances in our understanding of the complex interactions between microbial communities, biogeochemical cycles, and the formation of sedimentary structures, bridging microbiology and Earth system science. His pioneering studies of microbial mats and stromatolites across a range of settings have illuminated the role of microbes in shaping Earth’s surface environments through time, while his innovative approaches to microbial processes in modern and ancient settings have inspired new directions in research. His atmospheric biosignature studies were instrumental for NASA’s Astrobiology Institute, of which he was a co-founding member. A prolific scholar and respected mentor, Dr. Visscher has authored hundreds of influential publications and trained generations of graduate students who continue to advance the discipline worldwide. His research, collaborations, and leadership have had a transformative impact on geomicrobiology, leaving a legacy that will guide the science for decades to come. 

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A needle microelectrode is being deployed for microscale geochemical measurements in microbial mats.

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Visscher performing 24-h measurements of microbial activities in permanently anoxic ecosystems at Salar La Brava in Chiles Atacama Desert. These ecosystems couple the cycling of carbon to those of arsenic and sulfur, making them the only known modern analogues of the Archean world.

Reply

 

Pieter: Thank you, Tracy, for your kind citation. I am honored to receive this recognition, which has been previously awarded to geochemists, paleontologists, sedimentologists, and geobiologists for whom I have great respect.

As many know, the term geobiology was coined by Lourens G.M. Baas Becking, but not in his monograph “Geobiologie”, published in 1934, but in his inaugural lecture at the University of Leiden on January 28, 1931, entitled “Gaia of leven en aarde”. In this lecture, Baas Becking observed a then recent change in natural and physical scientific research that for the first time were deployed jointly to understand our planet. Furthermore, he expanded his observation that chemistry, biology, and geology did not just apply to the understanding of our planet Earth but provided the foundation for understanding the universe, which he argued was fueled by cyclic events - notably chemical element cycles, but also (micro)biological metabolisms, and physical phenomena, the mutual impact of which was captured in geological time and space. In a way, this laid the groundwork for what, 65 years later, became a motivation for NASA’s Pale Blue Dot II meeting that, in turn, started Astrobiology. Baas Becking viewed geobiology as a Copernican-based science, in other words, perceived not from an anthropocentric, Earth-centric viewpoint, but from a geocentric one. What really matters is that geo(micro)biology is a transdisciplinary science, not just a multidisciplinary one. The answer to “big questions” in this discipline is best solved by first assessing which disciplinary tools are needed, not just by combining disciplinary views that address the question. Despite incredible advances in methodologies in the last four decades, each approach has its limitations. This is critical to remember.

My educational background is based on a combination of organic chemistry and the Delft School of Microbiology – that, in addition to Baas Backing, also included Beijerinck, Kluyver, and van Niel. In addition to having a great mentor, Hans van Gemerden, who combined detailed observations and measurements in the field with meaningful ecophysiological laboratory experiments, I have had the good fortune to meet many scientists who have shaped our discipline as we know it today. The list is quite exhaustive, but I would like to mention a handful of them here briefly, some unsung heroes in geomicrobiology, in chronological order.

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Table-top scanning electron micrograph of a carbonate grain surrounded by and bored into by cyanobacteria.

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As night settles over the Atacama desert, the measurements continue

Wolfgang Krumbein was instrumental during my PhD work on sulfur cycling at the University of Groningen. After a long 24 hours of fieldwork, being in a group that was the first to use microelectrodes in the field during diel cycles, a very tedious process at the time, he would sit me down in his cigar-smoke-filled office and question me about everything I had observed and was planning to do as follow-up. Early in my grad student years, he sent me a box with well over a hundred of his reprints. Using geology and microbiology, his strong belief that the laminae in stromatolites are the same as those in microbial mats may be wrong, but it nevertheless challenged our thinking and steered us in the right direction to better understand the role of microbes on early Earth and throughout geologic time. Spending three weeks with Dick Castenholz and Bev Pierson in Yellowstone was a life-changing event. The vast diversity of environments in a relatively small area was an eye-opener. Likewise, several long discussions, both in the field and during elegant home-cooked meals with Malcolm Walter, have contributed much to advancing my work. Lynn Margulis, who, by the way, together with James Lovelock reintroduced the term Gaia in 1974, 43 years after Baas Becking, Ed Leadbetter, Ron Oremland, Jack Farmer, and Dave DesMarais were all instrumental as post-doc and early career mentors. Generous scientists who gave selfless advice and listened. I learned a lot from them and expanded my scientific and interpersonal horizons. It takes a village….

I would like to thank the people who are keeping our field alive: the leaders of the professional societies, notably the Division of Geobiology and Geomicrobiology of Geological Society of America, the reviewers of our proposals and manuscripts, the program directors at funding agencies, the educators, who sparked the interest in students who then come as graduate assistants or post-docs to our labs, and all those students and colleagues with whom I had many fruitful/stimulating discussions and rewarding collaborations. I am excited about the direction in which our field is moving, and hope that we jointly continue to combine the many subdisciplines that make up geo(micro)biology in a meaningful way to unlock the secrets that our field holds in shaping our planet and the many worlds beyond.

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Visscher at the Galan volcano in Argentina

Avery Point Spotlight: Jeff Godfrey

By: Anne L. Gilewski

Officially, Jeff is an Academic Assistant at UConn's Marine Sciences Department, but if you’ve ever been lucky enough to interact with Jeff, you know he’s far more than that.  Over his 26-year career directing dive operations, Jeff standardized a formal curriculum that includes course work for Open Water Dive and Scientific Diving training and certification.  He also maintained all facilities and equipment, approved dive plans, and has been part of countless research projects that require dive operations. 

Every superhero has an origin story, so we asked Jeff to share his! 

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Jeff Godfrey has had a 26 year long career in diving

Growing up in Utah, Jeff had three dream jobs in his mind: paleontologist, astronaut, or diver. After watching cartoons, Jeff would switch over to Sea Hunt, a 1958 program about the adventures of an ex-Navy frogman, starring a very handsome Lloyd Bridges. After that was The Undersea World of Jacques Cousteau, a series that often served as inspiration for future marine biologists—including Jeff.  

Despite living in a landlocked state, diving found Jeff. During his senior year in high school, when he wasn’t racing motorcycles and boating, Jeff took a diving certification course after school class—a move he says was a good way to get out of chores. Though the impetus may have been to avoid milking the cows, that course set the stage for a lifelong passion.  

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For a long time, Jeff has played a role in the development and field testing of rebreather technology, here at a site in North Carolina more than 15 years ago

Jeff set out to build up a collection of certifications, started snorkeling, free diving, and collecting daphnia and salamanders for local aquarium stores. At 24, he earned his Dive Instructor certification. In 1987, while earning his bachelor’s degree in Applied Biology from Utah State University, Jeff joined the Utah Fish & Wildlife Cooperative Research Unit as a Field Tech and Research Diver. Being a field diver is most decidedly not a desk job. A typical day might be ice diving in the Flaming Gorge reservoir, or monitoring trout habitat in the Green River, maybe even donning 90 extra pounds to face the white water of the Green River!  

After graduation, Jeff accepted a position at the Marine Resources Development Center Underwater Foundation’s MarineLab program in Key Largo, FL. Jeff taught Marine Ecology to students of all ages, conducting lectures on seagrasses, marine algae, mangroves, coral reefs, astronomy, and marine invertebrates—to name a few.  A chance phone call from Avery Point librarian Jan Heckman about an open Dive Safety Office position in a small Connecticut town piqued his interest. In 1999, Jeff and his family moved north, and the rest is history. (Thank you, Jan!) 

Amongst all the diving Jeff had done, we had to know: What was the most memorable? (Spoiler alert! It was hard to choose). 

“Blue water diving in Antarctica. To see that environment—icebergs, Deception, Palmer Station”, Australia, Hong Kong, China, American Samoa, and everywhere in the United States.” Jeff also had the opportunity to dive the USS Monitor and take part in a National Geographic survey in the Bahamas—diving to 430 feet! 

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On a summer day in 2013, Jeff returns from dive training in the waters around Avery Point (fltr: Melissa Cote, Tabitha Jacobs, Hillary Kenyon, Ashley Frink, Corey Leamy, Alexandra Moen-URI assistant DSO).

We asked Jeff what it takes to be a DSO at a university. Here’s his advice 

DSOs facilitate dive operations to be done safely and efficiently. Jeff strongly believes in looking at universities that have a well-developed program. A STEM degree, with coursework in physics, chemistry, and biology, is a critical piece. A research DSO needs to have a solid science background to effectively communicate with investigators—graduate degrees are not uncommon in this field.  Most importantly, spend a lot of time in the water. Diving is a tool; for a diver to be useful, they need to have extensive experience in a variety of conditions. 

Any final thoughts? 

Jeff is grateful to UConn for supporting his endeavors to increase technology for scientific diving here at Avery Point. His hope for the future? UConn continues to push students to take advantage of these advanced technologies in their academic pursuits.  

Thank you, Jeff, for 26 years of service. We wish you the best in your retirement! 

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Jeff (left) doing benthic research with Chris Conroy (right) in Long Island Sound

Seaweed self defense!

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Common periwinkles (Littorina littorea) graze upon the intertidal seaweed Fucus vesiculosus and elicit anti-herbivore defenses (credit: C Matassa)

Did you know that seaweed practices self-defense? A new paper from the Matassa Lab led by recent PhD graduate Sean Ryan on seaweed defense plasticity has been published in Functional Ecology. They investigated how a species of seaweed (Fucus vesiculosus) defends itself from herbivorous snails (Littorina littorea) along its latitudinal range in the coastal northeast USA.

Check out the plain language summary of the article here:

Ryan, S. and Matassa, C.M. (2025) Latitudinal variation in the constitutive and inducible defences of a canopy-forming rocky intertidal seaweed. Function Ecology 39:3718–3731.

New seafloor lander tested and in action

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The ice edge of Hans Glacier in Hornsund fjord, Svalbard

By Elizabeth Weidner.

Over the past year, the Broadband Acoustics Lab, led by DMS Assistant Professor Elizabeth Weidner, designed and built a new kind of seafloor lander to investigate how melting glaciers are transforming the coastal Arctic ocean.

The custom-built instrument houses several advanced sonar systems that use sound to observe processes that are otherwise difficult to capture in remote, ice-covered environments.

The lander was developed, assembled, and tested at the University of Connecticut, in close collaboration with Professor Tom Blanford from the University of New Hampshire. A new DMS graduate student, Cloé Mueller, who joined the lab in the fall, played a key role in system testing and preparation.

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The seafloor lander on board the RV Connecticut for testing in Long Island sound

The lander will be deployed this summer in Svalbard near a marine-terminating glacier, where it will collect long-term acoustic measurements. These data will help the Broadband Acoustics Lab better understand how melting glaciers influence ocean structure, underwater sound propagation, and the rapidly changing Arctic environment.

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Members of the broadband acoustics lab testing the lander deployment with the Jere A Chase engineering team at the University of New Hampshire (left to right: Elizabeth Weidner, Cloé Mueller, Thomas Blanford)

DMS students help mapping sediments and fauna in Long Island Sound

Carlee Dunn and Riley Pena, DMS graduate students in the Matassa Lab, worked alongside researchers from the University of Connecticut, University of New Haven, and US Geological Survey aboard the R/V Connecticut to map benthic habitats in western Long Island Sound. The cruise used USGS’s Seabed Observation and Sampling System (SEABOSS) to capture video and sample seafloor sediments and benthic organisms, such as brittle stars.

The team’s research is part of the Long Island Sound Habitat Mapping Initiative, which aims to characterize the regions seafloor habitats. You can see more of the action on the teams facebook page!

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Riley Pena (l.) and Carlee Dunn (r.) with the SEABOSS on board the R/V Connecticut

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A brittlestar, related to see urchins and sea stars, is retrieved from the SEABOSS samples

DMS researchers test novel underwater “presenter” helmet

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Prof. emer. Peter Auster during the test dive of the new presenter helmet

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Research Professor Emeritus Peter Auster led a development project to demonstrate the utility of a "presenter helmet" and integrated oxygen rebreather to engage audiences with video recorded directly from environments of interest. The novel helmet allows an expressive human face and voice rich in excitement, in contrast to standard helmets and full-face masks.

The field test was conducted from the RV Weicker in a shallow seagrass meadow off Avery Point. The project was funded by CT SeaGrant with vessel support from the CT National Estuarine Research Reserve. Mike Lombardi from Lombardi Undersea LLC designed and built the helmet, rebreather, and submersible video "studio" complete with voice from the helmet. Associate Professor Jason Krumholz from the CT Reserve also dove the helmet and collected multiple video segments for posting over the web. The potential for “live dives” with a host on the seafloor is a possibility in the future.

Celebrating Student Research at the 15th Biennial Feng Colloquium

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Most of the participants of the 15th biennial Feng Colloquium at DMS on 15 May 2025

By Samantha Rush.

On May 15, 2025, the Department of Marine Sciences hosted the 15th Biennial Feng Graduate Research Colloquium. Named in honor of the first department head, Dr. Sung Y. Feng, the colloquium serves as a professional development event for our departments graduate students, who hone their skills in abstract writing, posters presentations and research talks. This year’s program featured 18 talks and 22 posters showcasing the breadth of multidisciplinary work across the department.

Started by Dr. Hans Dam in 1996, the 2025 Feng Steering Committee included Dr. Julie Granger, Emily Watling, Yifan Zhu, and Anne Gilewski. This year’s event also featured artwork by Matthew Leason and was made possible with the support of DMS staff, particularly Deb Schuler and Todd Fake. The event continues to be a valuable platform for students to hone their scientific communication skills, receive feedback, and share their work across the department.

Check out the talks, posters, and their abstracts here!

Check out a few more impressions from the day below!

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Artwork by Matthew Leason

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Yifan (r.)

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Jessica (l.) & Xavier (r.)

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Eva (r.)

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DMS mingling at the Poster session

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Madison

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Dave (l.), Paban (m.) & Xavier (r.)

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Sunnidae (l.) & Pax (r.)

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Penny (l.), Evan (m.) & Hans (r.)

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Vicki You

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Matthew (l.) & Sarah (r.)

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Anne (l.)

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Sunnidae

Graduate Students Bring Ocean Science to Life at Sip ‘n Science Event

By Samantha Rush.

Last Friday, DMS graduate students hosted the annual Sip ‘n Science event at Beer’d Brewing Co. in Stonington, featuring interactive science demonstrations for the local community. Despite a torrential downpour outside, the event was well attended and highlighted meaningful engagement between students, faculty, and the public. Students designed demonstrations of oceanographic principles or their own research, showcasing the breadth of work at the Marine Sciences department while also gaining valuable experience in communicating complex scientific concepts to a general audience.

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Erin Leathrum (l.) and Sarah McCart (r.) found a way to visualize microfossils.

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Carley Dunn (l.) and Halle Berger (r.) having fun showing off macrobenthic organisms.

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Hannah Roby (r.) and her giant cardboard black sea bass.

This year’s demonstrations covered a wide range of topics, including microfossils, mercury, marshes, ocean waves, isotopes, ocean acidification, the Coriolis force, sea ice brine, Black Sea Bass gut contents, planktonic species, and coastal snails and crabs. Students were nothing short of creative - designing wave tank races, ranking games for mercury-impacted species, isotope explanations using the Hungry Hungry Hippos game, visual displays of acidification effects on seashells, rotating table experiments with dye to show ocean forces, larger than life-sized sea bass cutouts, and salty ice cubes to simulate polar sea ice processes.

Well done, everyone! The department is truly proud of its graduate students!

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Genius! Hungry hungry Hippos to visualize isotopes or just to have fun ...

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You never know when passion starts. Outreach plants seeds.

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Julie Granger (l.) and Catherine Mattassa (r.) - Sip 'n Science!

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Emma Siegfried (l.) dissolving shells - ocean acidification illustrated.

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Catherine Crowley (l.), Alex Frenzel (m.), and Peter Ruffino (r.).

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Bernard Akawaase explains the wave tank

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A highlight was Paban Bhuyan's and Bernard Akaawase's (not shown) rubber ducky wave tank.

“Just keep swimming: challenges in PhD research”

The ole adage holds true for DMS graduate student Emma Siegfried’s first experiments on a new species of sand lance

 

By Samantha Rush and Hannes Baumann

In 1984, the late Alphonse Smigielski and colleagues published a research paper that showed how American sand lance (Ammodytes americanus) could be successfully spawned and reared in the laboratory. Now, DMS PhD student Emma Siegfried is working to continue experimental research on this species, finding that revisiting the 40 year old study is not without challenges.

Sand lances are so called forage fish, meaning that their role in the ecosystem is to eat tiny planktonic organisms while being important food themselves for higher trophic animals such as other fish, seabirds, and marine mammals. Despite their importance, there is insufficient information about how this species will cope to climate change, particularly during the most sensitive larval and embryo stages. To fill this knowledge gap, Emma’s work focuses on exploring how increasing water temperatures and carbon dioxide (CO2) levels affect sand lance embryos and larvae.

Previous research conducted in Prof. Hannes Baumann’s Evolutionary Fish Ecology lab discovered that embryos of the closely related Northern sand lance (Ammodytes dubius) are extremely sensitive to elevated CO2 levels, as they are projected to occur in future oceans. However, whether American sand lance are equally CO2 sensitive is not known.

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On October 2nd 2024, Emma Siegfried looks at the beach seine stretched across the sand at low tide in Wells Harbor

American sand lance collected in Wells, ME, are being transported in a cooler to the Rankin lab at UConn Avery Point

Emma’s thesis research began in 2024 by first trying to find a reliable and easy to access location, where the species could be found and collected. In the harbor of the Wells National Estuarine Research Reserve in Wells, Maine, she found what she needed, because her fish occurred in high numbers there and could be sampled at low tide easily via beach seine. Now Emma’s goal was to catch the fish as close as possible prior to their spawning season, which in the case of sand lance starts with the beginning of winter.

In late August and early October 2024, Emma and her lab mates successfully collected sand lance and transported them live to the Rankin Seawater at Avery Point. There, however, sand lance proved challenging to care for, as they prefer spending days to weeks burrowed in sand (hence their name), making it difficult to monitor their health and development. Subsequent sampling efforts in November and early December brought a new set back, because the previously accessible population in Wells Harbor had evidently moved into slightly deeper waters and thereby out of reach for the beach seine. Unfazed, Emma proceeded to rear the fish she already had in the lab, hoping that they would ripen and eventually produce embryos for a CO2-sensitivity experiment.

At first, this looked like another failure. Sand lance use the declining temperature as a cue to ripen, but the waters of eastern Long Island Sound that flow through the Rankin lab remained unseasonably warm well into December. Eventually, however, on 23 December 2024, water temperatures crossed the critical 7°C threshold, and 3 days later, Emma and her lab mates indeed succeeded in strip-spawning a few ripened up females! The fertilized embryos were then placed in the Automatic Larval Fish Rearing System (ALFiRiS) that allows computer-controlled exposure of organisms to different temperature and CO2 conditions.

On 26 December 2024, Hannes Baumann, Emma Siegfried, and Lucas Jones lift a bowl of sand out of the big circle tank to look for buried sand lance.

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25 days old embryos of American sand lance developing slowly at 8 degrees celsius

Unfortunately, more experimental setbacks followed. Less than 1% of the embryos actually developed to hatch, the CO2-induced acidification did not produce the desired target pH levels, and a system malfunction remained undetected long enough to raise water temperatures to unnatural levels. Emma remains positive, however, and looks at her trials and tribulations as well as the preliminary data as a valuable exercise in gathering experience with this new, non-model species.

“Even though it didn’t go the way we expected, [we] still learned a lot.” she says.

She added that science is by definition challenging, but she is eager to apply what she has learned and move forward. More generally, her thesis research aims to answer the question whether CO2-sensitivity is a shared trait among sand lance species. To that end, she is applying for a grant to collaborate with researchers in Bergen, Norway who have experience with another, closely related sand lance species (Lesser sand eel, Ammodytes marinus). She hopes to secure funding to travel and conduct research there from December 2025 through March 2026.

DMS sophomore to study if tiny algae grow calcium carbonate crystals

A supply grant from UConn's Office of Undergraduate Research (OUR) will test whether cyanobacteria could assist with removing carbon dioxide

Evelyn Lewis glances at the well plates full of colorful slime in Prof. Visscher’s lab and smiles. The life thriving in there is invisible to the naked eye, but she knows how to keep the microscopic critters happy. For almost a year now, she has helped taking care of them, and this has helped others in the lab with their research projects.

But now, Evelyn is starting a project of her own. Her soft voice betrays the nascent excitement, as she examines a well plate full of what looks like crusty, white dust.

“These are calcium carbonate crystals, and they look so beautiful under the microscope”, she says.

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On February 12, Evelyn Lewis examines test plates of CaCO3 precipitates in the lab

Thanks to a new supply grant from UConn’s Office for Undergraduate research, she will now have the opportunity to look at many more of these crystals. Evelyn’s research will focus on some of the smallest photosynthetic organisms in world, cyanobacteria. When they bloom they often coat themselves in slime that they can chemically manipulate. The conditions in this extracellular slime might then become favorable to bind carbon dioxide (CO2) in form of calcium carbonate (CaCO3), ultimately removing it from the atmosphere. In other words, cyanobacteria may be tiny but mighty as a natural tool for combating the increase of heat-trapping CO2 in the atmosphere.

“These natural options of using microbial slime for CO2 removal remain surprisingly underexplored”, explains Visscher. “The slime binds calcium and when it sinks to the bottom, it supports CaCO3 formation in sediments for thousands of years. This recently discovered mechanism provides novel insights into the global carbon cycle.”

So over the course of the next months, Evelyn will culture cyanobacteria again – but this time for her project. In small well plates, she will measure their CaCO3 production for about two weeks in relation to differing amounts of calcium. Yet the arguably coolest part will come after that, when the collected crystals will be examined using scanning electron microscopy (SEM) and energy dispersive X-ray spectroscopy (EDS).

Ultimately, the gathered data will allow testing the overarching hypothesis that the presence of cyanobacteria increases CaCO3 precipitation.

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SEM photograph of rhomboid CaCO3 crystals formed in the presence of a large amount of calcium (lots of slime)

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Needle-shaped carbonate crystals form when a smaller amount of calcium, or less slime, is present (note the difference in scale).