Author: Hannes Baumann

Summary of Summer/Fall 2024 Departmental Achievements

Posted on December 2, 2024December 6, 2024 by Hannes Baumann

Awards:

Professor Samantha Siedlecki

Prof. Siedlecki was named as a 2024 – 2025 Fullbright Scholar for research in both Italy and South Africa, which has been featured at UConn Today

Professor Hans Dam

Professor Dam had the honor of giving the Maxilliped Lecture on “Copepods as Model Systems for the Study of the Response of the Biota to Global Change” during the 15th International Conference on Copepoda held in Hiroshima, Japan.

Research Faculty Sandra Shumway

Dr. Shumway was awarded the Distinguished Lifetime Achievement Award by the US Aquaculture Society and is the first female to receive the award. She was also appointed Fellow of the Marine Biological Association, FMBA. MBA Fellows are senior practitioners in marine biology who have contributed to the discipline at the highest level. The title of Fellow of the Marine Biological Association, FMBA, was first awarded in 2014, following granting of a Royal Charter to the Marine Biological Association. There are currently 50 MBA Fellows.

Professor Senjie Lin

Professor Lin has been awarded the 2024 UConn-AAUP Excellence Award in as well as the 2024 Alumni Faculty Excellence Award in Research and Creativity.

Research Scientist Susan A. Smith (Mystic Aquarium):

Sue won first place in Animal Welfare Research for her presentation at the annual Association of Zoos and Aquariums conference in Calgary. Her work involved the use of non-invasive fecal samples to elucidate the microbiome and hormone profile of the African Penguin, along with the development of a genetic sexing test, which will soon be used to aid in the monitoring of endangered wild populations in South Africa.

PhD student Paxton Tomko

Paxton was awarded a National Science Foundation Graduate Research Fellowship (NSF-GRFP) for research with Professor Pieter Visscher, which was featured at UConn Today

PhD Candidate Halle Berger

Halle was awarded the 2024 National Marine Fisheries-Sea Grant Fellowship by NOAA making her the first UConn student to ever receive the award.

Grants:

Professor Senjie Lin

Prof Lin will collaborate with the University of Columbia and Yale University on a DARPA-funded multi-year (2024-2027) project that aims to utilize algal genomics to develop biosensors for various environmental stimuli

MEBES: Modular engineered biosensors for environmental sensing

Research Professor Paola Batta-Lona, Professor Hannes Baumann

Led by UConn EEB professor Eric Schultz, co-PIs Batta-Lona and Baumann will collect and analyze novel data on short- and long-term changes in the trophic ecology of species of greatest conservation need.

Bottoming Out? Testing Hypotheses on Why Long Island Sound Flatfishes Are Disappearing (Long Island Sound Study, $316,667).

Professor Heidi Dierssen and Research Professor Paola Batta-Lona

In collaboration with colleagues from URI, Dierssen and Batta-Lona will use eDNA to characterize biological communities in shallow seafloor, deep-sea seafloor, and offshore midwater acoustic soundscapes. Additionally remote sensing data and Distributed Sensing enabled Cabled Observatories (DiSCO’s) will be used for broader scale understanding of major ocean processes in these areas.

Coastal and Offshore Biogeochemical Oceanographic Observatories Enabled with Distributed Sensing (NIUVT, $2,126,000)

Research Scientist Zhuomin Chen

Projecting future changes in the Gulf Stream warm-core rings and their impacts on the Northeast U.S. Large Marine Ecosystem in a changing climate using regional MOM6 simulations (NOAA $570,000)

Research Scientist Tracy Romano (Mystic Aquarium) and Associate Professor in Residence Michael Finiguerra:

Drs Romano and Finiguerra were awarded an NSF grant to continue leading the Research Experience for Undergraduates (REU) program through an ongoing collaboration with Mystic Aquarium and the University of Connecticut Avery Point campus.

Romano, T.A., Finiguerra, M. REU Site Mystic Aquarium: Collaborative Research: Plankton to Whales: Consequences of Global Change within Marine Ecosystems. National Science Foundation. $464,997.

Research Scientists Ebru Unal and Tracy Romano (Mystic Aquarium):
Drs Unal and Romano were awarded a North Pacific Research Board grant to further study the transcriptome of the beluga whale for the monitoring of wild populations, in an effort to isolate the health-related expression discrepancies between healthy and endangered populations.

Romano, T.A., Unal, E. The Beluga Skin Transcriptome as a Novel Tool for Monitoring Alaska’s Beluga Stocks. North Pacific Research Board. $244,601

Dr. Romano also received funding by the North Pacific Research Board to design and run a cultural exchange that allowed young Native Alaskans to visit Connecticut, where they met with local CT Native American youth, and together took part in educational and cultural workshops.

Romano, T.A., A Science Based Educational and Cultural Exchange Workshop at Mystic Aquarium for Alaska Native and Native American Youth. $20,000

Publications:

Prof. Hans Dam

Prof. Dam co-authored a study about the negative effects of marine heatwaves on copepods. The authors found that acclimation (“getting used to”) and parental effects (“the fate of the children depends on the experience of the parents”) mitigate the negative effects of heat waves on the fitness of two important copepod species.

Sasaki, M.C, M. Finiguerra, H.G. Dam. 2024. Seasonally variable thermal performance curves prevent adverse effects of heatwaves. Journal of Animal Ecology 2024;00:1–11. DOI: 10.1111/1365-2656.14221

Graduate student Samantha Rush and Professor Penny Vlahos

This study reports on how sea ice in the Arctic Ocean incorporates and stores boron as it forms, reducing the amount of boron from under ice waters.

Rush, S., Vlahos, P., Lee, C.-H., Lee, K., Barrett, L. J. Boron to salinity ratios in the Fram Strait entering the Central Arctic: The role of sea ice formation and future predictions. Marine Chemistry. 267:104463. https://doi.org/10.1016/j.marchem.2024.104463

DMS alumnus Max Zavell and Professor Hannes Baumann

Zavell and Baumann show that the embryos and larvae of an abundant grouper species in Long Island Sound are unaffected by even very high CO2 levels in the water.

Zavell, M.D. and Baumann, H. (2024) Resiliency of Black Sea Bass, Centropristis striata, early life stages to future high CO2 conditions. Environmental Biology of Fishes 107:677–691

Research Prof. Paola Batta-Lona and Prof. Ann Bucklin

This morphological and molecular analysis revealed the diet differences of 7 mesopelagic fish species, showing the importance of gelatinous prey.

Bucklin, A., Batta-Lona, P.G., Questel, J., McMonagle, H., Wojcicki, M., Llopiz, J.K., Glancy, S., Caiger, P.E., Francolini, R., Govindarajan, A., Thorrold, S.R., Jech, M., Wiebe, P.H. (2024). Metabarcoding and morphological analysis of diets of mesopelagic fishes in the NW Atlantic Slope water. Front Mar Sci. 11:1411996. https://doi.org/10.3389/fmars.2024.1411996

Batta-Lona also published a study on the diet diversity of three salp species, which showed a wide variety of prey, broadening our understanding of trophic pathways in the mesopelagic food web.

Batta-Lona, P.G., Gardner, K., Questel, J.M., Thorrold, S.R., Llopiz, J.L., Wiebe, P.H., Bucklin, A. (2024). Salps in the NW Atlantic Slope Water: metabarcoding and compound-specific stable isotope analysis of diet diversity and trophic interactions. Mar Biol 171, 233. https://doi.org/10.1007/s00227-024-04535-x

Batta-Lona further published a study that identified parrot fish larvae via morphology and DNA sequences.

Morales‐Pulido, J. M., Galindo‐Sánchez, C. E., Jiménez‐Rosenberg, S. P. A., Batta‐Lona, P. G., Herzka, S. Z., Arteaga, M. C. (2024). A molecular approach to identify parrotfish (Sparisoma) species during early ontogeny. Journal of Fish Biology 1-10 https://doi.org/10.1111/jfb.15921

Batta-Lona was also involved in the MetaZooGene Atlas and Database (MZGdb) provides DNA sequences for multiple genes, with unique capacity for searches by ocean region.

O'Brien, T., Blanco-Bercial, L., Questel, J.M., Batta-Lona, P.G., Bucklin, A. (2024). MetaZooGene Atlas and Database: Reference Sequences for Marine Ecosystems. Methods in molecular biology 2744: 475-489. https://doi.org/10.1007/978-1-0716-3581-0_28

Prof. Peter Auster

Prof. Auster used diver surveys of reef fish off Florida to map predation risk to coral eating fishes.

Auster, P.J. and M.E. Cullerton. 2024. Can variation in fish predator density and the Landscape of Fear facilitate coral restoration success? Reef Encounter 39:48-50.

In another study, Prof. Auster and colleagues argue that the term "destructive fishing" is used in international agreements and guidance without agreement on what this term means.

McCarthy, A.H., D. Steadman, H. Richardson, J. Murphy, S. Benbow, J.I. Brian, H. Brooks, G. Costa-Domingo, C. Hazin, C. McOwen, J. Walker, D. Willer, M. Abdi, P.J. Auster, ..., N. Mukherjee. 2024. Destructive fishing: An expert‐driven definition and exploration of this quasi‐concept. Conservation Letters, e13015. https://doi.org/10.1111/conl.13015

Post-doctoral researcher Danielle Freeman

Dr. Freeman published an article together with colleagues at WHOI that forecasts the effects of sunlight-driven chemistry during oil spills.

Freeman, D. H.; Nelson, R. K.; Pate, K.; Reddy, C. M.; Ward, C. P. (2024) Forecasting Photo-Dissolution for Future Oil Spills at Sea: Effects of Oil Properties and Composition. Environ Sci Technol. 58: 15236-15245 https://doi.org/10.1021/acs.est.4c05169

Research Scientist Ebru Unal (Mystic Aquarium):
Dr. Unal showed that skin samples can reveal relevant differences between endangered and stable beluga whale populations.

Unal, E., V. Singh, R. Suydam, C.E. Goertz, and T.A. Romano. (2024). Comparative skin transcriptome analysis as a potential tool to investigate intra- and inter-population differences in belugas. Frontiers in Marine Science: Marine Conservation and Sustainability. 11:1282210

Research Scientist Tracy A. Romano (Mystic Aquarium):

Aerial photogrammetry and lipid analyses can be used to describe the body condition of wild endangered St. Lawrence Estuary beluga whales.

Sherill, M., A. Bernier-Graveline, J. Ewald, Z. Pang, M. Moisan, M. Marzeliere, M. Muzzy, T.A. Romano, R. Michaud, and J. Verreault. (2024). Scaled mass index derived from aerial photogrammetry associated with predicted metabolic pathway disruptions in free ranging St. Lawrence Estuary belugas Frontiers in Marine Science. 11:1360374.

Danielle A. Lavoie (Mystic Aquarium):

This study provided insight into the detection of the invasive nematode parasite A. crassus using identification monitorting methods that allow for the survival of the host A. rostrata (the American eel).

Lavoie, D.L., Oliveira, K. (2024). Non-Lethal Detection of the Invasive American Eel Parasite Anguillicoloides crassus. Diseases of Aquatic Organisms.

A delayed spring bloom along the West Antarctica Peninsula

Posted on December 2, 2024December 2, 2024 by Hannes Baumann

By Samantha Rush.

If you think about the holiday season, it is easy to grasp the trend that Christmas festivities that used to begin traditionally after Thanksgiving in the US appear much earlier. In recent years, the timeline has shifted and many Christmas and holiday themed advertisements, decorations, and events appear even sooner than before. Of course, this notable shift has traceable causes and is known (consciously or subconsciously) to be driven by retail strategies, commercialization, consumer behavior, social media influences, and cultural shifts.

The changes in the timelines of global phenomena also extend to marine environments. In fact, the polar regions are some of the most rapidly changing locations on the planet due to human induced climate change. In the West Antarctic Peninsula (Figure 1), a combination of warming and sea ice loss have altered the timing of recurring seasonal events, the study of which is known as phenology. While most predictions have suggested that these changes in the environment would cause an earlier spring bloom, or ocean biology to kick start, lead author and postdoctoral researcher Jessie Turner found exactly the opposite in a recent study of the ice-associated waters west of the Antarctic Peninsula.

Using satellite ocean color data from 1997 to 2022, researchers from the University of Connecticut and five other collaborating institutions and laboratories discovered that spring blooms were shifting later in ice zones and on continental shelf regions west of the Antarctic Peninsula (Figure 2). By using satellite derived chlorophyll-a concentrations as a proxy for phytoplankton biomass, researchers were able to track the concentration and timing of the elevated concentration corresponding to the date when heightened biological activity begins.

After investigating a handful of environmental variables to better ascertain the potential mechanisms for the seasonal shift, the authors found that wind speed was the most likely mechanism for the observed change in the spring bloom start date. Other variables such as light and temperature did not explain the trends. However, there was a long-term increase in wind mixing, which likely decreases the stability of the water column in the early spring season and suppresses phytoplankton accumulation until later in the season (Figure 3).

While phytoplankton are small single cell plants, the timing of the phytoplankton spring bloom affects the entire marine food web. Higher trophic level organisms may experience feeding, migration, and breeding impacts. In fact, phenology changes at the base of the Antarctic food web are likely to disrupt the life history of key species such as Adélie penguins. Other, widespread impacts also include potential changes to the timing and magnitude of carbon dioxide absorption by the ocean in these locations.

Next, the researchers plan to investigate specific phytoplankton species and employ the use of new generation hyperspectral satellite missions to further study long-term trends in polar regions. Rapidly developing technology combined with field measurements will allow for better examinations of the changes rapidly occurring in this polar region in studies to come.

Jessica S. Turner, J.S., Dierssen, H., Kim, H.H., Stammerjohn, S., Munro, D.R., and Kavanaugh, M. (2024). Changing phytoplankton phenology in the marginal ice zone west of the Antarctic peninsula. Marine Ecology Progress Series 734: 1–21

Meet DMS alumnus Dr. Chris Murray

Posted on December 2, 2024December 2, 2024 by Hannes Baumann

Samantha: I appreciate you taking the time to do this interview. Can you briefly share some of the highlights from your time at UConn?

Chris: I came to UConn in 2014 joining Dr. Baumann’s lab when he was just starting as a first-year faculty member. My research focused on the effects of climate stressors on fish, particularly in their early life stages. We did experiments exposing fish to climate change stressors like acidification, warming, and hypoxia, which laid the groundwork for many future studies and my work today. At the time, the research was novel, and I got to build the lab alongside Hannes. Avery Point was great for its diversity of undergraduates and young scientists incorporated into research as well as its diversity of research foci from all the different major oceanographic topics.

Samantha: Now, I found that you did your bachelor's in business administration and management. Can you tell me how you made the shift to becoming an oceanography PhD student?

Chris: I was a naive first-generation college student, and when I struggled with biology and chemistry, I just switched to business. By my senior year, I realized it wasn’t for me, but I had matured academically to know what to do to get to the next step and I morphed my business administration degree into environmental science with a capstone project. I still lacked practical science experience though, so the summer before graduate school, I volunteered extensively with local science groups and universities. When contacting graduate programs, many told me I wasn’t competitive for the program, but I found the Marine Policy and Conservation Program at Stony Brook School of Marine Sciences geared towards non-science majors. There, I met Hannes, who was an adjunct professor, and I ended up working with him as a master’s student. It was pure serendipity that I had been there at that moment to get the position! When Hannes moved to UConn, he offered me a PhD position to start his lab, and it was a no brainer! In all, it was a combination of stick-to-itiveness, luck, being in the right place at the right time, seeing opportunities that evolved, and taking advantage of them!

Samantha: After your PhD, what has your career path looked like?

Chris: During my PhD, I applied for a postdoc at Friday Harbor Labs with the University of Washington (UW), but I didn’t get it. However, in the same email, I was offered a 12-month postdoc at the Washinton Ocean and Certification Program to design a project without preconceived notions. I took that and ran! I established awesome collaborations at UW, University of Western Washington, Northwest Fishery Science Center, and USGS Fish Health and Wildlife Center. I did awesome things I never dreamed I would do when I was an undergraduate. It was a risk going out there, but that leap of faith was the most awesome thing I have ever done for my growth.

Samantha: What a cool adventure! So, what’s your current position?

Chris: As my postdoc ended, I was offered a permanent research position at UW, but I had looked for opportunities back east and found that Woods Hole Oceanographic Institute (WHOI) offered a Postdoctoral Scholars Program. Again, I was not selected, but I was also encouraged to write a National Science Foundation Postdoctoral Research Fellowship proposal, which ultimately got funded. Considering I never sold my girlfriend-now-wife to a permanent position in Washington, we moved back east. My postdoc at WHOI was an incredible fellowship opportunity, and once that ended, I applied for tenure track faculty jobs. I had varying success, but WHOI didn’t want to lose me, so I was offered my now permanent research job in biology.

Samantha: I also heard you were recently offered a faculty position at the University of Maryland Center for Environmental Science at the Chesapeake Biological Lab. What led to your decision to decline the offer?

Chris: It was a dream job for me, but my wife and I found out we’re having a baby and our families are here in Cape Cod. We have a lot of ties to this area, so moving away didn’t feel like the right choice for us right now. It’s a tough reality of academic life- being willing to jump around the country to various opportunities- but with everything we have here, it made more sense to stay. I’m confident this won’t be my only opportunity.

Samantha: That is such a thoughtful decision. It is great to hear how you’re balancing career and personal life. So, what advice do you have for current graduate students?

Chris: Seriously consider your long-term plans, especially as you approach the second half of your degree. You can do a lot now to set yourself up for the next step. It’s true that there aren’t millions of jobs, but if you have a sober idea about what you want, taking steps towards it can make transitions smoother. Also, keep in mind that there are still more opportunities available than you can ever appreciate. Even rejected proposals can be reformatted. The endeavor is always really worth it, at least in my experience.

Samantha: Fantastic advice! And just for fun- what do you enjoy doing outside of research?

Chris: Basically, all the outdoor activities- hiking, snorkeling, scuba diving, backpacking, kayaking, fishing. I don’t have all those options on the Cape, but I have more time to enjoy them than I did as a graduate student.

Samantha: That’s awesome! Thanks again for sharing your story and advice, Chris. It was great chatting with you!

New fellowship offers outreach experience for DMS students!

Posted on September 17, 2024September 17, 2024 by Hannes Baumann

The New Generation of Marine Scientists and Stewards Fellowship is a new initiative led by Dr. Zofia Baumann, who has secured funding for the Department of Marine Sciences to award $1,500 to each of three graduate students for the academic year 2024/25. The inaugural recipients of this fellowship are Anagha Payyambally, Emily Watling, and Bernard Akaawase, who bring a rich diversity of backgrounds, experiences, and expertise to share with K-12 students in Groton, CT.

Located in the southeastern corner of Connecticut, Groton is part of the ancestral territory of the Mohegan, Mashantucket Pequot, Eastern Pequot, Schaghticoke, Golden Hill Paugussett, Nipmuc, and Lenape Peoples, who have been stewards of this land for generations. Groton is also classified as an Environmental Justice Community, underscoring the importance of land and water stewardship to protect the marine ecosystems that coastal communities, including Groton, rely on. Scientific inquiry is a powerful tool that can empower people to become environmental stewards, and the fellowship recipients will engage with K-12 students in Groton to share their unique perspectives on this process.

Anagha Payyambally is a first-generation graduate student from India pursuing a Ph.D. in chemical oceanography. She understands the immense value of sharing ideas with the younger generation and is eager to contribute to this initiative.

Emily Watling, a New England native passionate about the marine environment, is working toward her M.S. with a focus on marine ecology. She is excited to collaborate with the other fellows and bring a "storm of ideas" to the table.

Bernard Akaawase, originally from Nigeria, is a third-year Ph.D. student specializing in physical oceanography. Committed to engaging with the younger generation, he has also served as the community outreach chair for the Graduate Students of Color Association (GSCA) at UConn.

As the fellows embark on this journey, stay tuned for updates on their activities and impact in the Groton community.

Bridget Holohan – MVP technician

Posted on June 5, 2023June 13, 2023 by Hannes Baumann

Ewaldo: What was your academic journey before you got here?

Bridget: I grew up in Michigan, and I wanted to be an oceanographer. The only school close to where I grew up that had an oceanography program was the University of Michigan, and I wasn't quite ready to go across the country at 18. When I was finishing up there –this was before the internet so finding a job to apply for was harder than it is now–I didn't quite know what I was going to do for a job and decided to go to graduate school. Okay, maybe it wasn’t the best decision to go based on that. I went to the University of Rhode Island and got my master's degree. I thought about whether I wanted my PhD, but I decided that I like to be the one getting my hands dirty, not the one writing a proposal or writing the paper. I wanted to be the one doing it. So, I decided if I got a PhD, more than likely, that wouldn't be what I was doing. I stopped at a master’s degree, which was a good decision for me. As I was finishing up there, I saw a job in the state of Connecticut at the Williams Mystic program. They were looking for a TA.

Ewaldo: And how did you decide to be an oceanographer?

Bridget: I decided to become an oceanographer when I was the age of 12. My family went on a cruise down in the Caribbean and one of the things we did was snorkel. The first time I went snorkeling, I was blown away. I had no idea that there were all these amazing things under the surface of the water. No idea. I grew up in the Midwest. I knew about fish, we have the Great Lakes, but the organisms under the water in the Great Lakes do not look like in the tropics. It was just so incredibly fascinating. I wanted to study the ocean but at that point it was just a fantasy doing research on the ocean. I was planning to become a pharmacist because that seemed more sensible. However, when I started thinking about applying to colleges, I asked myself: why would I be a pharmacist? What I really want to do is oceanography.

Ewaldo: Williams-Mystic program. What is it?

Bridget: It's an off-campus study program of Williams College, which is conducted at Mystic Seaport. And it's entirely based around the ocean. Students come in for one semester. It's like a semester abroad, only it is a domestic program which is focused on the ocean. And they take either marine biology or oceanography. They also take maritime history, marine literature, and marine policy. They read Moby Dick, as you might imagine. They totally get immersed in the program.

Ewaldo: That’s super interesting. What was your master’s degree in?

Bridget: My master's research was on the ecology of Ceriantheopsis americanus, which is a burrowing mud anemone.

Ewaldo: And why didn't you follow up on that particular topic?

Bridget: There's not a lot of jobs for that particular topic. So, I found a job that was mainly education. But it was a horrible salary. Like a third of what you students make. So, in the summer, I went to an oceanography summer camp and worked there. Then after a couple of years, I was like: “Okay, I cannot make a living at this”. I was searching around not being so successful. In the meantime, I did another environmental education job down in Virginia, which was fun.

Ewaldo: All the way down! So when did you come back up to the Northeast?

Bridget: As I was finishing that up, my former boss said: “I got a Pew Foundation Grant, and I put in money for a research assistant. Do you want to come work with me?” I said yes and I went to work with him, but it was only a two-year grant. As that was coming to an end, I saw a job by a man named Evan Ward. I didn't really know anything about culturing phytoplankton, which was what he wanted. But I figured I could learn. Why not? Right. So yeah, that's how I got here. And that was in 1999.

Ewaldo: It's been 24 years! And what was your position then – and currently?

Bridget: I was a research assistant when I started. Now, I'm a research assistant three, but in a lot of ways, my job is very similar. The only thing that has really changed is that as funding got tight, I started to work for Rob Mason as well. I also worked with Claudia for some time, because her job was expanding. I like the fact that there's a lot of variety. I hate being bored.

Ewaldo: You have done a lot of different things and learned a lot of things in this dynamic way. What were your biggest challenges and also biggest joys here?

Bridget: You know, I really enjoy working with bivalves, I like running experiments. Even though sometimes they can be a little crazy. I like seeing the whole process, from what we are proposing to do, to making it happen, and analyzing the data. And then luckily, I don't have to write it.

Ewaldo: Would you have advice for grad students?

Bridget: Boy, that's a really good question. One of the things in this is just kind of funny, because writing is not my favorite thing to do. But people often get hung up on the writing portion, thinking to themselves: “Okay, I need to write the perfect sentence”. Sometimes you just need to write. The beauty of the computer is that you can delete it, you can move it, you can copy and paste it into a different document. So you just have to get your ideas down on “paper”, and then refine them later. Just write it down, get it on the computer, and then fix it.
Also, I recognize that there can be a weird power dynamic between students and professors. But with most professors, you can really just say, “I need help with this….” Rather than wasting a bunch of time, being afraid to ask. Professors will be more receptive than if you wait five months and say you haven't been able to get this to work for five months. That is especially true when students are first starting out, and I see that is an easy role for me to fill. Because students are more comfortable coming to me and saying: “Hey, I don't know what's going on here”. Usually I can point them in a direction or even facilitate the conversation. And of course, there have certainly been times that my advice has been about things having nothing to do with oceanography.

Ewaldo: This is all great advice. Thank you. Maybe the final question, what's the story behind the five cents for advice in your door?

Bridget: I came back to my office one day, and we had a new nameplate and my title was wrong. Nobody told us they were going to change nameplates. I was not happy, so I took it off. I, of course, calmed down. I was going to put the correct title and make it more legible by making our names bigger (I shared an office at the time). It wasn’t a priority for me, so I took my time replacing it. One day I came back to my office and the Lucy character from the Peanuts comic was there. In the Peanuts comics, she had a little booth where she gave advice for five cents. One of my colleagues put it in there because sometimes people come to me for things other than science related advice. I found out later that it was Jeff Godfrey. I thought it was super funny, so I just left it. And one day I came back and there was a little bag of nickels.

Ewaldo: Who did that?

Bridget: It was Lydia Norton

Ewaldo: I guess that sounds about right! Hehe. Thank you so much, Bridget!

Graduated Master and PhD students 2022-23

Posted on June 5, 2023June 5, 2023 by Hannes Baumann

The Department of Marine Sciences congratulates all our recent Master and PhD graduates! You worked hard, earned your degree, and enriched our community. Thank you, and best of luck for your next career steps!

Annalisa Mudahy (M.S. 2022)

Major advisor: Craig Tobias

Thesis: Spatial and Temporal Patterns of Water Column Respiration in an Urban Estuary Revealed Using Automated Respiration Chambers

Mathew Holmes-Hackerd (M.S. 2022)

Major advisor: Hans Dam

Thesis: Naupliar Exposure to Acute Warming Shows no Carryover Ontogenetic Effects on Respiration Rates, Body Size, and Development Time of the Copepod Acartia tonsa

Annette Carlson (M.S. 2022)

Major advisor: Samantha Siedlecki

Thesis: Quantifying Interannual Variability of Shelf Nutrients and Associated Hypoxia in St. Helena Bay with New Metrics and Tools

Lingjie Zhou (Ph.D. 2022)

Major advisor: Senjie Lin

Dissertation: Estimate Phytoplankton Carbon Biomass using DNA

Mary McGuinness (M.S. 2022)

Major advisor: Penny Vlahos

Thesis: Examination of Controlling Parameters for Total Alkalinity in Long Island Sound Embayments

Yipeng He (Ph.D. 2023)

Major advisor: Robert Mason

Dissertation: Air-Sea Exchange of Mercury and Its Species in the Coastal and Open Ocean

Patricia Myer (Ph.D. 2023)

Major advisor: Robert Mason

Dissertation: A Critical Examination of the Factors Controlling Methylmercury Uptake into Marine Plankton

Josie Mottram (M.S. 2023)

Major advisor: Julie Granger

Thesis: Refining the Use of Cold-Water Corals as a Proxy for the Marine Nitrogen Cycle Through the Comparison of the δ15N of Diet, Tissue, and Skeleton of Balanophyllia elegans

Michael Mathuri (Ph.D. 2023)

Major advisor: Julie Granger

Dissertation: Physiological Mechanism of Nitrogen Isotope Fractionation During Ammonium Assimilation by Marine Phytoplankton

CT-NERR is fully staffed and operational!

Posted on June 5, 2023June 20, 2023 by Hannes Baumann

By Ewaldo Leitao

Thanks to the tremendous efforts of our esteemed researchers, the University of Connecticut now hosts the Connecticut National Estuary Research Reserve (NERR). The NERR System is a network of 30 coastal areas designed to protect and study estuarine ecosystems. The NERR System is a program of NOAA (National Oceanic and Atmospheric Administration), and recently Connecticut was added to this group. These reserves serve many purposes, and Long Island Sound is a large economic contributor and recreational area. Considering the importance of coastal and estuarine ecosystems, the Connecticut Reserve is an important program that fosters management guided through information collected by scientists. Some of the sites selected include Bluff Point and Haley Farm State Park. You can read more about it here.

While the initiative and leadership was spearheaded by Prof. Jamie Vaudrey within the Marine Sciences Department, the office now counts with many new names and faces. You will find them located in offices on the second floor. But we want to make sure to give them all a proper welcome! You can find their full bios and contact information here.

Jamie Vaudrey - Research Coordinator - CT NERR

Jamie is a marine ecosystems ecologist and modeler, interested in the impacts of humans on coastal waters. She received a B.A. in Biology with a minor in Philosophy from Wellesley College, MA; moved on to study environmental education in the Florida Keys, then in Oregon; then on to graduate school at the University of Connecticut. Jamie was the UConn lead, shepherding the establishment of a NOAA National Estuarine Research Reserve in Connecticut and is currently the Research Coordinator for the Reserve. Jamie is also involved with EPA’s National Estuary Program, serving on the science advisory committees of the Long Island Sound Study and the Narragansett Bay Estuary Program. You can learn more about her research interests by visiting her website: https://vaudrey.lab.uconn.edu/. Her favorite reserve is the Mumford Cove! “I first ‘met’ Mumford Cove as a graduate student, 24 years ago – the study location of my dissertation. In 1999, eelgrass was just starting to recolonize the Cove and I had the opportunity to document the progress of its return, working with a team of fellow grad students and undergrads who are still some of my best friends today. Amazing how much a small Cove has to teach, and how many opportunities it provides!”

Larissa Graham - Education Coordinator - CT NERR

Larissa has worked in the environmental field for nearly 15 years, sharing science-based information with a variety of coastal audiences. She worked for the New York Sea Grant as the Long Island Sound Study Outreach Coordinator, and for the Mississippi-Alabama Sea Grant, the Grand Bay National Estuarine Research Reserve, and, most recently, the Student Conservation Association as the Alabama and Mississippi State Director. Larissa is looking forward to settling back into her New England roots. She spent a lot of time boating and fishing with her family as a child, which fostered her love for the Sound.

Ashley Hamilton - Research Assistant - System Wide Monitoring Program (SWMP)

Ashley graduated from the UConn Avery Point community with a B.S. in marine sciences, and completed a master’s degree from the University of Rhode Island, where her research focused on the impacts of anthropogenic stressors to commercially important bivalve species. Since 2016 she has worn various hats in the shellfish and seaweed aquaculture industry, including farm hand, hatchery production and researcher. Ashley is excited to guide the next generation of undergraduate researchers. Ashley shared that her “NERRdiest” thing is to get tattoos of the organisms she works or studies, which includes a (scientifically accurate!) anatomical eastern oyster. She shares: “Next on my wish list is a blue mussel shell in celebration of finishing my thesis, and I can see some marsh plants and critters in my future as I venture into the CT NERR monitoring program!”

Jason Krumholz - Stewardship Coordinator - CT NERR

Jason is an Associate Professor at UConn and the Stewardship Coordinator for the Reserve. In this role, he helps to facilitate resource inventory, conservation, and restoration goals in concert with federal, state, and local partner organizations as well as contributes to scientific research, outreach, and education efforts at the Reserve. He served with NOAA’s Northeast Fisheries Science Center as the Liaison Ecologist to the Long Island Sound Study, where he worked with a wide range of partner organizations at the interface of science and policy on several efforts to improve the transmission of scientific data into management. He is the Chief Scientist for two small non-profits; The Reef Ball Foundation, which uses designed artificial reef technology to facilitate coastal restoration, and Slow No Wake, which works on marine debris removal and education in the recreational fishing sector. He is also a founding board member of Remote Ecologist, a non-profit organization designed to remove the barriers to participation faced by independent and unaffiliated research scientists. Jason recounted that once he got roped into diving off of Pine Island to collect green crabs in the middle of the winter for a colleague. "It was so cold that ice was literally forming on our gear. It was one of those moments that was pretty miserable at the time, but the memory of it is somehow very positive… one of those moments where you realize that if you like what you do enough to do THIS, then you’re probably going to really enjoy doing it for the rest of your career.”

Katie Lund - Coastal Training Program Coordinator - CT NERR

Katie joins the Reserve from her previous position at UConn’s Connecticut Institute for Resilience and Climate Adaptation where she led engagement activities and managed municipal and research grant projects to increase resilience of Connecticut’s communities to the growing impacts of climate change. Katie has worked for over 20 years on a variety of coastal management topics – including the Northeast Regional Ocean Council and Long Island Sound’s marine spatial plan and the Massachusetts Office of Coastal Zone Management’s special area management. Katie holds an M.S. in Marine Resource Management from Oregon State University. “One of my favorite memories of the Reserve is the first walk I did on Bluff Point with my kids when they were very young”, shared Katie. “After we’d gone a couple miles and they were ready to turn around, I saw a small side trail to the right and convinced them to try it. We popped out onto a beautiful beach…such a surprise – I had no idea there was such a BIG and quiet and beautiful beach as part of Bluff Point. Over ten years later, I now work for the NERR and this beach is part of our new reserve!”

George McManus - Interim Manager and UConn Center Director - CT NERR

George is a biological oceanographer. He received his PhD from Stony Brook University and worked at the Cary Institute of Ecosystem Studies, the University of Maryland, and the Dauphin Island Sea Lab before coming to UConn, where he has taught for 28 years. His research is focused on microbial plankton, including bacteria, phytoplankton, and ciliated protozoa, documenting their diversity and distributions in the coastal ocean. He is currently serving as the Interim Reserve Manager and Center Director. One of his fond memories of the Sound is when he was fishing with his son and a seal popped up next to the boat with a fish in his mouth. “We just stood there watching and marveling at this bit of the food chain taking place before our eyes”, said George.

Sam Stadnick - Fiscal Officer - CT NERR

Sam joins the Reserve as its Fiscal Officer after working in the Connecticut House of Representatives where he assisted elected officials with their constituent service and legislative responsibilities. He is thrilled to use his experience in public affairs to protect the natural areas of Eastern Long Island Sound and the Lower Connecticut River Valley where he has been a longtime hiker and boater. Sam is also very proud to return to UConn, where he graduated with a B.A. in Political Science. Sam mentioned that: “When fishing near Millstone Point with my father, we would often catch Tautog, or blackfish – one of the most beautiful (and delicious) fin fish in Long Island Sound. The rocky outcroppings that lie off of Millstone Point provide great habitat for the fish and great recreational fishing opportunities.”

Brittany Sprecher continues science in Germany and California

Posted on June 5, 2023June 5, 2023 by Hannes Baumann

By Ewaldo Leitao

Brittany Sprecher finished her PhD in December, 2020, and soon after she moved to Germany to continue her investigations on phytoplankton molecular biology. In her PhD, Brittany was able to develop molecular techniques to begin to help explain the complexity of dinoflagellates. Dinoflagellates are small eukaryotic cells that can photosynthesize and produce their own energy or, sometimes and, be heterotrophic, eating even smaller cells such as bacteria. Their complexity does not end there. Their genomes are astoundingly large, varying from one third up to 90-fold that of the human genome size. This complexity translates into lots of unknowns on their molecular characterization, that Brittany has bravely shed some light on during her PhD.

Ewaldo: Thank you so much for agreeing to be interviewed. First, can you give me a brief explanation of your work conducted while in UConn?

Brittany: I had the great opportunity to work under Prof. Senjie Lin and Prof. Huan Zhang. My work primarily involved developing transformation methods for dinoflagellates, a complex group of organisms. Additionally, I utilized transcriptomics to gain insights into the molecular characteristics of a recently discovered dinoflagellate. It's fascinating how much we still have to learn about these organisms, as many of their genes remain unknown in terms of their functions. Even key pathways like toxins and bioluminescence, which have significant ecological importance, have missing or poorly understood genes. To address this knowledge gap, I focused on establishing a method to introduce foreign DNA, such as the green fluorescent protein or an antibiotic-resistant gene, into dinoflagellates with the goal that the cells would take up and express the introduced proteins.

Ewaldo: This is super interesting. So where did you go after your PhD? And how did the work at Uconn allow you to get there?

Brittany: After obtaining my PhD, I had the opportunity to do a Postdoc in Germany, which turned out to be an incredible experience. Interestingly, my focus remained on method development, but this time I shifted my attention to diatoms who are endosymbionts of dinoflagellates. The transformation methods for diatoms were comparatively more straightforward, allowing me to complete the method development in just one year, whereas it took four years for dinoflagellates. I believe that the valuable experiences and challenges I faced during my PhD greatly contributed to my success during the Postdoc. The obstacles we encounter along the way ultimately shape us into stronger scientists with enhanced troubleshooting abilities.

Ewaldo: This seems like a great experience, to do your Postdoc abroad.

Brittany: Absolutely! It was truly fascinating to observe the research and graduate school culture in Germany. One aspect that particularly stood out to me was the tradition of having lunch together as a lab. Initially, I found it a bit strange, feeling the urge to quickly return to work. However, I soon realized the immense value of these interactions. During these lunch sessions, we would engage in discussions about science, troubleshoot any issues we were facing, or simply delve into various aspects of life outside of work. This time proved to be exceptionally productive and nurturing for our mental well-being, fostering collaboration and support among lab members. The experience of sharing meals together truly enhanced our ability to collaborate and assist one another with our projects. On the whole, my time in Europe was an enriching experience that expanded my scientific network and broadened my perspective on research.

Ewaldo: Indeed. What are you up to these days?

Brittany: Currently, I have the privilege of working at the University of California, San Diego, on an NSF Postdoctoral Fellowship in Biology. I'm actually continuing one of the research chapters from my PhD, focusing on a dinoflagellate species that exhibits native green fluorescence. My project involves utilizing analytical chemistry techniques to determine the structure and potential function of this fluorescent molecule. While analytical chemistry is slightly outside my expertise, I am fortunate to be part of an institution that fosters collaboration, and I have been able to connect with several supportive chemists who are aiding me in this discovery. Additionally, I'm conducting laboratory experiments to identify the conditions under which the green fluorescence changes, and I'm collecting samples from the Scripps Pier to assess the prevalence of this blue-green fluorescence among dinoflagellates locally and hopefully globally by the end of this fellowship.

Ewaldo: Incredible expertises. So what are your next steps? Do you have anything in mind?

Brittany: I'm deeply passionate about dinoflagellates and diatoms, and my aim is to continue delving into these fascinating organisms. Consequently, I will actively pursue academic positions that allow me to further explore and contribute to this field. Additionally, I plan to continue applying for fellowships and grants that can support my research endeavors. My ultimate goal is to make meaningful contributions to our understanding of these organisms and their ecological significance.

Ewaldo: Since you mentioned the struggles of a PhD student, do you have advice for grad students and / or early career?

Brittany: One of the most valuable pieces of advice I received before starting my PhD was to invest time in getting to know my cohort. I cannot stress enough how important this has been for me. The support, camaraderie, and collaboration that I have shared with my cohort has been invaluable in navigating the ups and downs of graduate school. Additionally, I highly encourage graduate students and early career scientists to actively seek out and apply for fellowships and grants. These opportunities not only provide financial support but also open doors for networking and collaborations. Lastly, remember that collaboration is key. Engage with your peers and colleagues, seek opportunities to collaborate, and leverage the collective knowledge and expertise around you. Together, we can accomplish so much more than we can individually.

Ewaldo: Finally, what are your hobbies?

Brittany: In my free time, I absolutely love surfing. Living in California provides me many opportunities to ride waves, and it's always a special experience when I find myself sharing the ocean with playful dolphins or witnessing the graceful dives of brown pelicans in search of food. I am also incredibly lucky to be reunited with Dr. Lingjie Zhou, who has been an incredible support in my life. It has been wonderful to spend time with her again both within the academic setting and in our personal lives.

Finally in person again: Feng Graduate Research Colloquium 2023!

Posted on June 2, 2023June 13, 2023 by Hannes Baumann

18 May 2023. After a COVID-forced hiatus of more than two years, our department finally held a successful Feng graduate student research colloquium in person again. The Feng Graduate Research Colloquium has been a tradition in the Marine Sciences Department since 1996. Named after the first Head of the Department of Marine Sciences, Dr. Sung Y. Feng, the colloquium was started by Prof. Hans Dam. The colloquium acts as a conference in which students receive friendly, constructive criticism, and have the opportunity to work on developing their abstract writing, leadership, and scientific communication skills. The Colloquium is funded by the Department of Marine Sciences and the S.Y. Feng Scholarship Fund.

This years colloquium featured 16 oral presentations and 20 posters spanning the entire diversity of marine research in our department. Special thanks to the student organizers and Debra Schuler for the help behind the scenes.

See the colloquium list of talks and poster presentations, including abstracts

Our [student] Life on the Ocean

Posted on May 31, 2023June 13, 2023 by Hannes Baumann

By Ewaldo Leitao.
When we say we work or study oceanography, it is common for us to be met with a: “Wow, you must spend a lot of time doing cool stuff in the ocean then!” Alas, most of us spend most of our time on a computer. However, cruises are still an essential part of oceanographic research to collect the necessary data or test equipment. In our department, many students have this opportunity to participate in such cruises; all with fascinating and unique research interests. Over the past year, several students joined cruises to get familiar with field techniques, collect their own data, or to better understand their study area. In this piece, graduate students in our Marine Sciences department shared their experiences in cruises that took place from Summer 2022 up to May 2023.

“In the Summer 2022 I participated in the Sea Education Association (SEA) summer cruise through the great pacific garbage patch, which sailed from Honolulu, HI to San Diego CA, starting In late June and ending in late July. SEA typically runs programs with undergraduates, who take part in cruises to learn about oceanography, sailing, and earn course credit. As a grad student, I was able to tag along as a visiting scientist and focus on collecting data.

My research focused on taking optical measurements, such as spectral reflectance, of freshly-collected plastic pieces. Previous work has been published on plastic spectral reflectance properties, but these measurements were made on dried and stored samples. Out in the environment, plastic pieces are likely to have some degree of biofilming growing on them. So, I sought to collect spectral reflectance measurements of freshly collected plastics in order to assess how the presence of biofilms might impact plastic spectral reflectance. Knowing this will be useful for sensitivity analyses seeking to develop a satellite-based ocean plastic detection algorithm.

During the cruise, I conducted daily neuston net tows to collect plastic pieces. Neuston nets are towed along the surface of the water to collect as many buoyant plastic pieces as possible. Once collected, I rinsed the plastics out of the net and into a bucket, then picked them out and aggregated them for spectral measurement.”

“I participated in NASA’s Sub-Mesoscale Ocean Dynamics Experiment (S-MODE) IOP1 as part of the science party aboard the R/V Bold Horizon. The cruise took place from 10/06/2022 – 11/04/2022 in the Pacific Ocean, approximately 100 miles offshore of San Francisco, California. The focus of this experiment was to sample ocean fronts that are a few kilometers in size to study their dynamics and effects on vertical transport. The ocean fronts were sampled using aircraft, ship surveying, and autonomous platforms such as wave gliders, sea gliders, saildrones, floats, and drifters. I worked the night shift from 4pm – 4am, running an instrument called an EcoCTD, which measures temperature, salinity, pressure, chlorophyll, backscatter, and oxygen. I also helped with the recovery and deployment of wave gliders and mixed layer floats.

I am currently (03/06/2023 – 04/06/2023) aboard NOAA’s R/V Ronald H. Brown for U.S. GO-SHIP’s decadal reoccupation of A16N in the Atlantic Ocean. I am participating in the first leg of the cruise, sailing from Brazil to Spain. The second leg of the cruise will be sailing from Spain to Iceland. This is a longline hydrographic cruise, where we take CTD casts at many stations along the same longitude line. The CTD rosette has 24 bottles and is deployed to the bottom of the ocean. I am working with Dr. Chris Langdon’s research lab out of the University of Miami. The Langdon lab is leading measurements on oxygen, pH, and total alkalinity. I am overseeing pH measurements using a spectrophotometer. Other groups are taking measurements which include DIC, DOC, CFCs, velocity, temperature, salinity, and biological samples. The best part of my trip so far has been getting to explore Brazil, crossing the equator, and viewing beautiful sunrises every morning.”

Yipeng He, alumnus of the Mason Mercury Lab, studied air-sea mercury exchange in the ocean for his PhD, also had cool research experiences in cruises.

“I was on a scientific cruise - the GEOTRACES GP17 cruise, leaving San Diego (CA) on Nov 13 2022. Going from North Pacific to South Pacific, crossing the Equator, going further south and crossing the Antarctic cycle, and arriving at Punta Arena (Chile) on Jan 25 (2023). The boat was R/V Roger Revelle, which was my second time sailing on this boat. The first time was the GEOTRACES GP15 cruise in 2018. I was collecting samples and measuring atmospheric mercury species, air-sea exchange of mercury species and surface ocean Beryllium-7 profile.”